posts tagged ‘pipeline’

Symposium Abstract #6 – Ulrike Schoeck

February 25th, 2011 by Richard Holland

This is the sixth of the abstracts for talks being given at the 1st Eagle Genomics Symposium, "Provisioning Bioinformatics for the Next Decade – are we prepared?". Here we will hear from GATC Biotech's Director of Bioinformatics, Ulrike Schoeck. Ulrike will talk on the subject of "From Sanger Sequencing to Third Gen Sequencing – are…

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Eagle and Manchester sign KTA for Taverna

February 3rd, 2011 by Richard Holland

Eagle Genomics Ltd. has signed a collaboration agreement with The University of Manchester to provide commercial support for Taverna, the open-source Workflow Management System. The partnership will see Eagle Genomics take on responsibility for providing commercial support for Taverna. Users of Taverna will benefit from an increased range and quality of support options, whilst Taverna’s…

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Eagle announces free bioinformatics audits

December 20th, 2010 by Richard Holland

Eagle Genomics is offering companies the chance to undertake a free audit of the bioinformatics used in their organisation. After the 1-hour meeting, Eagle will write a short report recommending ways to optimise the use of existing tools and suggesting areas in which extended use of bioinformatics tools might be of value. Companies wishing to…

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What do Eagle pipelines do?

December 17th, 2010 by Richard Holland

Eagle Genomics can produce a vast array of genomic data analysis pipelines each tailored to your specific needs. Our pipeline design and construction service is as hands-on or as hands-off as you require – if you have a specific workflow in mind, we can code it, but if you have a general question you just…

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As R&D Budgets Shrink and Data Grows, Bioinformatics Service Providers Could Gain in Popularity

December 14th, 2010 by Richard Holland

GenomeWeb published an article in BioInform this week giving a great case study of our relationship with local biotech firm Cytocell. It describes the state of the bioinformatics outsourcing market in general and gives examples of a number of firms active in the area. Several quotes from our recent white paper entitled "Ten Steps to Successfully…

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Ten Steps to Successfully Outsourcing Industrial Bioinformatics

November 9th, 2010 by Richard Holland

Eagle publishes a white paper to help make bioinformatics outsourcing a success.

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Bio-IT World Europe 2010 slides

October 4th, 2010 by Richard Holland

Here are the slides I just presented at the Cloud Computing Workshop at Bio-IT World Europe 2010 in Hannover, Germany. Other speakers included Dave Powers from CycleComputing, and Glenn Proctor from the EBI, both of whom presented very interesting summaries of how they had been using cloud technology to improve the services that their organisations…

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European Conference on Computational Biology, Ghent ( ECCB10)

September 17th, 2010 by Nick

In a couple of weeks I shall be attending the ECCB10 conference in Ghent. I have just been reading through the talks and needless to say it looks interesting. I shall be presenting a poster this time, on "An Ensembl-based pipeline for microRNA prediction and expression profiling using Next Generation Sequencing data" I've already described  this…

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An Ensembl-based pipeline for microRNA prediction and expression profiling using Next Generation Sequencing data

August 16th, 2010 by Nick

Further to my last post about my visit to the UK Next Generation Sequencing conference in Nottingham last week, I have now uploaded my talk which you can see below.  It was a 20min talk describing a pipeline we have created for predicting novel miRNA using Next Generation Sequencing Data.  If you have any questions…

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UK Next Generation Sequencing Conference in Nottingham

August 13th, 2010 by Nick

Well it has been a busy first day of the UK Next Gen Sequencing meeting. As well as some informative talks on more convential NGS topics, such as library preparations, assembly strategies and SNP discovery  using NGS, there was also some interesting presentations on some more unusual application of NGS, such as for determining the…

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